Image credit: UnsplashA thread focusing on a mutation in Omicron that looks promising as a potential indicator of trace Omicron presence in wastewater: N:DEL31/33. Let's dig in!
— Todd J Treangen (@traingene) December 11, 2021
Earlier in the week, traces of Omicron were detected in Houston wastewater, highlighted here: https://t.co/cn4rz1h375
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Todd J. Treangen
Associate Professor of Computer Science, Bioengineering
My research interests include algorithms and data structures for efficient analysis of microbial genomes and metagenomes
Dr. Nicolae Sapoval
PhD student
Dr. Sapoval received his Ph.D. in Computer Science from Rice University in May 2024. Previously he obtained a B.S. degree in Computer Science and a B.S. with Honors in Mathematics from the University of Chicago. At the University of Chicago Nick worked in wireless networks research and later in computational biophysics focusing on conformational transition modeling for insulin degrading enzyme. His current interests are in the areas of computational biology with a focus on genomic data.
Dr. Yunxi Liu
PhD student
Dr. Liu received his Ph.D. in Computer Science from Rice University in May 2024. Previously, Louis (4th year PhD student) obtained a B.S. degree in Computer Science from the University of Houston and a B.S. degree in Pharmacology from China Pharmaceutical University. During his undergraduate in UH, he did research in the Pattern Analysis Laboratory on image feature extraction. His current research interests include computational biology, metagenomics, and data science.
Dr. Michael Nute
Research Scientist
Mike (Research Scientist) received his Ph.D. in Statistics in 2019 from the University of Illinois at Urbana-Champaign where he was advised by Dr. Tandy Warnow in the Department of Computer Science and worked on algorithms related to multiple sequence alignment and phylogenetic tree estimation, in particular applying these methods to studying microbial communities. He was co-advised by Dr. Rebecca Stumpf in the Department of Anthropology where he and other lab members developed novel methods to compare the microbiomes of human and non-human primates. His research interest is in discovering a new applications for our understanding of microbial communities.