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Sergey Koren

Graph-based variant discovery reveals novel dynamics in the human microbiome
Graph-based variant discovery reveals novel dynamics in the human microbiome
MetaCompass: Reference-guided Assembly of Metagenomes
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification
MetaCompass: reference-guided assembly of metagenomes
Metagenomic assembly through the lens of validation: a review of recent advances in assessing and improving the quality of genes and genomes assembled from metagenomes.
Diversity in a polymicrobial community revealed by analysis of viromes, endolysins and CRISPR spacers
Mash: fast genome and metagenome distance estimation using MinHash
Automated ensemble assembly and validation of microbial genomes
Complete genome sequence of the quality control strain Staphylococcus aureus subsp. aureus ATCC 25923
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
De novo likelihood-based measures for comparing metagenomic assemblies
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
GAGE: A critical evaluation of genome assemblies and assembly algorithms
Bambus 2: scaffolding metagenomes
Next generation sequence assembly with AMOS
ScaffViz: visualizing metagenome assemblies

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