Mihai Pop

Latest

Graph-based variant discovery reveals novel dynamics in the human microbiome
Graph-based variant discovery reveals novel dynamics in the human microbiome
Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications
MetaCarvel: linking assembly graph motifs to biological variants
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes
Hierarchically visualizing metagenome assembly graphs with metagenomescope
You can't always sequence your way out of a tight spot: Next-generation sequencing holds great promise for pathogen detection, but the devil is in the details
MetaCompass: reference-guided assembly of metagenomes
Metagenomic assembly through the lens of validation: a review of recent advances in assessing and improving the quality of genes and genomes assembled from metagenomes.
Diversity in a polymicrobial community revealed by analysis of viromes, endolysins and CRISPR spacers
Limitations of current approaches for reference-free, graph-based variant detection
Automated ensemble assembly and validation of microbial genomes
De novo likelihood-based measures for comparing metagenomic assemblies
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
A framework for human microbiome research
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
Bambus 2: scaffolding metagenomes
Next generation sequence assembly with AMOS
ScaffViz: visualizing metagenome assemblies