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Adam M Phillippy

Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets
Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification
Identification and genomic analysis of a novel group C Orthobunyavirus isolated from a mosquito captured near Iquitos, Peru
Mash: fast genome and metagenome distance estimation using MinHash
Automated ensemble assembly and validation of microbial genomes
Complete genome sequence of the quality control strain Staphylococcus aureus subsp. aureus ATCC 25923
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
GAGE: A critical evaluation of genome assemblies and assembly algorithms

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